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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os10g41230.1 |
Common Name | HOX1, LOC4349388, Os10g0561800, OsJ_031189, OSJNBb0089A17.12 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
HD-ZIP |
Protein Properties |
Length: 312aa MW: 33143.2 Da PI: 8.9755 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os10g41230.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 156 | 210 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Le+ F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
LOC_Os10g41230.1 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTK 210
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.1 | 1.5e-40 | 156 | 245 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LE++F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL++e +eLr +l
LOC_Os10g41230.1 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELR-AL 245
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MEMMVHGRRD EQYGGLRLGL GLGLSLGVAG GAADDEQPPP RRGAAPPPQQ QLCGWNGGGL 60 FSSSSSDHRG RSAMMACHDV IEMPFLRGID VNRAPAAETT TTTARGPSCS EEDEEPGASS 120 PNSTLSSLSG KRGAPSAATA AAAAASDDED SGGGSRKKLR LSKDQAAVLE DTFKEHNTLN 180 PKQKAALARQ LNLKPRQVEV WFQNRRARTK LKQTEVDCEL LKRCCETLTD ENRRLHRELQ 240 ELRALKLATA AAAPHHLYGA RVPPPTTLTM CPSCERVASA ATTTRNNSGA APARPVPTRP 300 WPPAAAQRSS A*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 154 | 160 | SRKKLRL |
2 | 204 | 212 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root provascular and vascular cylinder, provascular and vascular strands of leaves, provascular and vascular strands of the whole panicle, in mature embryo provascular bundles of scutellum and embryonic axis and provascular and vascular strands of young immature spikelet organs. Expressed in differentiating and differentiated xylem and phloem elements, and in outer and inner bundle sheath cells of all vascular bundles. Expressed in auricles, ligules, culm, guard cells brac hairs and pollen. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:9076993}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK065404 | 0.0 | AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence. |
Publications
? help Back to Top |
- Meijer AH,de Kam RJ,d'Erfurth I,Shen W,Hoge JH
HD-Zip proteins of families I and II from rice: interactions and functional properties. Mol. Gen. Genet., 2000. 263(1): p. 12-21 [PMID:10732669] - Scarpella E,Boot KJ,Rueb S,Meijer AH
The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition. Plant Physiol., 2002. 130(3): p. 1349-60 [PMID:12428000] - Scarpella E,Rueb S,Meijer AH
The RADICLELESS1 gene is required for vascular pattern formation in rice. Development, 2003. 130(4): p. 645-58 [PMID:12505996] - Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Scarpella E,Simons EJ,Meijer AH
Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis. Plant Cell Physiol., 2005. 46(8): p. 1400-10 [PMID:15964905] - Agalou A, et al.
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151] - Meijer AH, et al.
Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice. Plant J., 1997. 11(2): p. 263-76 [PMID:9076993] - Meijer AH,Ouwerkerk PB,Hoge JH
Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast, 1998. 14(15): p. 1407-15 [PMID:9848232]
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