PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g33960.1 | ||||||||
Common Name | HB2, HOX9, LOC4348919, Os10g0480200, OSJNBa0093B11.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92132.2 Da PI: 5.5943 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 29 | 87 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L + + +++ +q+kvWFqNrR ++k+ LOC_Os10g33960.1 29 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 87 5678****************************************************996 PP | |||||||
2 | START | 159.3 | 3.1e-50 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ g g+++ LOC_Os10g33960.1 167 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIE 258 7899******************************************************9999999999.***********999999999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l LOC_Os10g33960.1 259 LVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVL 351 ****************************************9999998888899**************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+++ ++k+++a+l++ + LOC_Os10g33960.1 352 RPLYESSRVVAQKMTTAALRHIR 374 *******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 9 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.435 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 26 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-16 | 28 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.61E-16 | 29 | 89 | No hit | No description |
Pfam | PF00046 | 4.9E-16 | 30 | 87 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.10E-6 | 81 | 120 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.5E-4 | 85 | 135 | No hit | No description |
PROSITE profile | PS50848 | 27.397 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 1.03E-72 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-21 | 166 | 352 | IPR023393 | START-like domain |
SMART | SM00234 | 3.5E-37 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-36 | 167 | 378 | No hit | No description |
Pfam | PF01852 | 3.8E-48 | 167 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 4.0E-49 | 697 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MAAAVAMRSG SGSDGGGGGY DKAGMDSGKY VRYTPEQVEA LERVYAECPK PSSSRRQQLL 60 RDCPILANIE PKQIKVWFQN RRCRDKQRKE ASRLQAVNRK LTAMNKLLME ENERLQKQVS 120 QLVHENAYMK QQLQNPSLGN DTSCESNVTT PQNPLRDASN PSGLLTIAEE TLTEFLSKAT 180 GTAVDWVPMP GMKPGPDSFG IVAVSHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC 240 RSLEVFTMFP AGNGGTIELV YMQMYAPTTL VPARDFWTLR YTTTMEDGSL VVCERSLSGS 300 GGGPSTASAQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL DLEAWSVPEV LRPLYESSRV 360 VAQKMTTAAL RHIRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSV 420 MGGDGIEDVI IACNAKKVRN TSTSANAFVT PGGVICAKAS MLLQSVPPAV LVRFLREHRS 480 EWADYNFDAY SASSLKTSSC SLPGLRPMRF SGSQIIMPLA HTVENEEILE VVRLEGQALT 540 HDDGLMSRDI HLLQLCTGID EKSMGSCFQL VSAPIDELFP DDAPLISSGF RVIPLDMKTD 600 GTPAGRTLDL ASSLEVGSTA QPTGDASMDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY 660 VRSIVSSVQR VSMAISPSRS GLNAGQKIIS GFPEAPTLAR WICQSYQFHL GVELLRQADD 720 AGEALLKMLW DYEDAILCCS FKEKPVFTFA NEMGLNMLET SLVALQDLSL DKIFDEAGRK 780 ALYNEIPKLM EQGYVYLPGG VCLSGMGRHV SFEQAVAWKV LGEDNNVHCL AFCFVNWSFV 840 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46312 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987812 | 0.0 | ||||
Expression Atlas | Q9AV49 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g33960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g33960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102830 | 0.0 | AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | Q9AV49 | 0.0 | HOX9_ORYSJ; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0E0R0G1 | 0.0 | A0A0E0R0G1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G14170.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS10T0480200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g33960.1 |
Entrez Gene | 4348919 |
Publications ? help Back to Top | |||
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