PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g23050.1 | ||||||||
Common Name | LOC4348490, Os10g0376900, OsJ_31307, OSJNBa0095C06.11, OSNPB_100376900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 34657 Da PI: 7.1384 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.7e-15 | 109 | 160 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ LOC_Os10g23050.1 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 160 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 107 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-15 | 107 | 164 | No hit | No description |
PROSITE profile | PS50888 | 16.412 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-17 | 108 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-12 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAGGGG SWDDPGLFAA EASLDVIQGV 60 DEWEVDQDQH ASSSSKVAAR PPVKAAAAAG KRKRRRAKAA KNREEIESQR MTHIAVERNR 120 RRQMNEYLAV LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQTLEARR TIKDHIDGGA 180 GESPSPFAGF FAFPQYSTAT SGHGGGGDAH SRIVVKPAET TTTAAGGGAG AAIADIEASM 240 VEGHASVKVQ ARRRPRQLLK LVAGLHQLGL TTLHLNVTTV AAMAMYSFSL KVEDGCKLGS 300 VEEIATAVHE ILERMQEEQA FADAKTSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 95 | KRKRRR |
2 | 91 | 95 | RKRRR |
3 | 109 | 120 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46600 | 0.0 | panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32968827 | 0.0 | ||||
Expression Atlas | Q7XF89 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g23050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g23050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058809 | 0.0 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613301.1 | 0.0 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 3e-77 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | Q7XF89 | 0.0 | Q7XF89_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | OS10T0376900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g23050.1 |
Entrez Gene | 4348490 |
Publications ? help Back to Top | |||
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