|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os09g36730.1 |
Common Name | LOC4347711, Os09g0538400, OsJ_30158, OSNPB_090538400, P0229B10.25 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
MYB |
Protein Properties |
Length: 252aa MW: 28224.5 Da PI: 8.9099 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os09g36730.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.9 | 4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl
LOC_Os09g36730.1 14 KGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
|
2 | Myb_DNA-binding | 60.2 | 4.5e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
LOC_Os09g36730.1 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0010224 | Biological Process | response to UV-B |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation |
GO:1903086 | Biological Process | negative regulation of sinapate ester biosynthetic process |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPVTHRPIN DSASNITISF EAAAAAARDD KAAVFRREDH PHQPKAVTVA QEQQAAADWG 180 HGKPLKCPDL NLDLCISLPS QEEPMMMKPV KRETGVCFSC SLGLPKSTDC KCSSFLGLRT 240 AMLDFRSLEM K*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK104408 | 0.0 | AK104408.1 Oryza sativa Japonica Group cDNA clone:006-203-E04, full insert sequence. |
GenBank | AK104457 | 0.0 | AK104457.1 Oryza sativa Japonica Group cDNA clone:006-301-B02, full insert sequence. |
GenBank | AK111966 | 0.0 | AK111966.1 Oryza sativa Japonica Group cDNA clone:006-202-H01, full insert sequence. |