PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g32510.5 | ||||||||
Common Name | LOC4347486, Os09g0501600, OsJ_29905, OSNPB_090501600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 28870.3 Da PI: 5.004 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.4e-09 | 80 | 127 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq LOC_Os09g32510.5 80 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 127 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.90E-11 | 74 | 131 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-17 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 76 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-7 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 82 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MLNMSRSISS LGLQVGEAKA PDSKKCKAEV NPKVEEAASD GSVGDRVQKQ GKGKNSSKPA 60 AEPPKDYVHV RARRGQATDS HSLAERVRRE KISQRMKVLQ DLVPGCNKVV GKALMLDEII 120 NYVQSLQQQV EFLSMKLATV NPQLDFGNLS TLLQKDMFQS CGPSVNSVFP LESAGTAFPF 180 CDQADFFQSF GLGAMENQCS LDLANTALPH TGSTQYAFQK QQRDLWEDNT FQYNDEQSQE 240 DAVSAPNFDG QLQAADHTEI EF* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q0J0S0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g32510.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g32510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059036 | 0.0 | AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651378.1 | 0.0 | transcription factor BHLH089-like | ||||
Swissprot | Q9CAA9 | 2e-52 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | A0A0E0ILZ2 | 0.0 | A0A0E0ILZ2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QTC5 | 0.0 | A0A0E0QTC5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z2S8 | 0.0 | A2Z2S8_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q0J0S0 | 0.0 | Q0J0S0_ORYSJ; Os09g0501600 protein | ||||
STRING | ORUFI09G16640.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS09T0501600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA09G16520.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 8e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g32510.5 |
Entrez Gene | 4347486 |
Publications ? help Back to Top | |||
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