PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g29930.1 | ||||||||
Common Name | LOC4347359, Os09g0475400, OsJ_29738, OSJNBa0026C08.39-1, OSNPB_090475400, P0556A05.2-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 505aa MW: 54188.8 Da PI: 7.3831 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.5e-18 | 219 | 268 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq LOC_Os09g29930.1 219 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 268 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-19 | 214 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-16 | 215 | 272 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-24 | 215 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.952 | 217 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-15 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 223 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP 60 TPPPTSQLQQ QQQQAFPGGI GTFSISHVAG ARPVAAAVVK AEPTPFVLWG QPAAAAAAHP 120 VAALGHHHHH HQWTLPFAGV GQVAATAARQ QQEWKGRVGG GGFMDSGSRS SGGAGFDDDD 180 GVAARREVSS SLKELTVRVD GKGGSCSGSG TDQRPSSPRS KHSATEQRRR SKINDRFQIL 240 RELLPHSDQK RDKATFLLEV IEYIRFLQEK VQKFEASVPE WNQENAKILP WSNIYFRSFW 300 KNSQSKGQNP GDDLPDPSQF IRNGSSSGYN FTGKPDDNHN MVTSAAASGA QELVETDHAA 360 SVSYRSAETP TNITNNVTSQ AQAQWASPAG VDDCAMNSEM LNNQQLAIDE GTISLSSQYS 420 QQLLGTLTHA LESSGVDLSQ SSISVQINLG KRAVKRPGAD GSSSSKELPS TSANNENMGH 480 QLTMLGGGTE ELPHPTKRHK SGNS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.16741 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987105 | 0.0 | ||||
Expression Atlas | Q69JI7 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g29930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g29930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | Q69JI7 | 0.0 | Q69JI7_ORYSJ; BHLH protein family-like | ||||
STRING | OS09T0475400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Representative plant | OGRP1360 | 17 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 8e-53 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g29930.1 |
Entrez Gene | 4347359 |