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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os09g29830.3 |
Common Name | OsJ_29731 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 429aa MW: 45288.4 Da PI: 6.1931 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os09g29830.3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29.7 | 1.1e-09 | 257 | 305 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq
LOC_Os09g29830.3 257 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 305
58*************************9....556*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 429 aa
Download sequence Send
to blast |
MDMSESSEKG MESNASSGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAAASAG 60 LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGGGMMAG 120 GPYGAADQAM GDAFGGTAEG LMDHHRNVGN DKAEEFAGNG HDEVPSSEVA GGDCSSKGSD 180 SKKRRRPNEV MGTDQVHSSN LPSDSANESV HSKDKGEESS PATTNGGKSK GKGAKETSES 240 QKEEYIHVRA RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY 300 VQSLQRQVEF LSMKLATVNP RLDLNIEGLL SKDLLRFPGV PSSSIGFSPE MMHPQLQLSQ 360 PGLIHGGTAG MANPDVFRRI IQAQLGAKDG SQMPHSLNGS FSDVSQMAYP SLGSQDLSIR 420 PSQDGFQM*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK121418 | 0.0 | AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence. |