PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g29830.1 | ||||||||
Common Name | OsJ_29731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 452aa MW: 47806.3 Da PI: 6.1942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.2e-09 | 280 | 328 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq LOC_Os09g29830.1 280 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 328 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.27E-11 | 275 | 332 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-17 | 275 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.65 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 278 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-7 | 280 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MLCSAGYYYA LGIRSLEPRL GDSMDMSESS EKGMESNASS GPGNGIPVEW QSQFSSAFAC 60 QPSVAAQHQQ HAMMDSFAAA SAGLWASSDV VSAMSSAAPP RGAGFLAPVP GFLQQGLGHF 120 PVDSGFIERA ARSTCFGGGM MAGGPYGAAD QAMGDAFGGT AEGLMDHHRN VGNDKAEEFA 180 GNGHDEVPSS EVAGGDCSSK GSDSKKRRRP NEVMGTDQVH SSNLPSDSAN ESVHSKDKGE 240 ESSPATTNGG KSKGKGAKET SESQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL 300 QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDLNIE GLLSKDLLRF 360 PGVPSSSIGF SPEMMHPQLQ LSQPGLIHGG TAGMANPDVF RRIIQAQLGA KDGSQMPHSL 420 NGSFSDVSQM AYPSLGSQDL SIRPSQDGFQ M* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38400 | 0.0 | callus| flower| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991041 | 0.0 | ||||
Expression Atlas | B9G448 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g29830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g29830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121418 | 0.0 | AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612420.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | B9G448 | 0.0 | B9G448_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM09G14350.4 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 6e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g29830.1 |