PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g28210.1 | ||||||||
Common Name | B1342C04.6, LOC4347252, Os09g0455300, OSNPB_090455300, P0025H07.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25347.7 Da PI: 6.8057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.8e-08 | 156 | 196 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L LOC_Os09g28210.1 156 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.421 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-13 | 148 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 151 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-13 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-5 | 157 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-6 | 170 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM 60 SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSSSEAMREM 120 IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM 180 DTASMLDEAI HYVKFLKSQV QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | RPPKRR |
2 | 156 | 161 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51063 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980482 | 0.0 | ||||
Expression Atlas | Q67TR8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g28210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g28210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060477 | 0.0 | AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence. | |||
GenBank | AK070458 | 0.0 | AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence. | |||
GenBank | AP005655 | 0.0 | AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07. | |||
GenBank | AP006057 | 0.0 | AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610996.1 | 1e-172 | transcription factor HEC2 | ||||
TrEMBL | A0A0E0GN98 | 1e-171 | A0A0E0GN98_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QSB7 | 1e-171 | A0A0E0QSB7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z200 | 1e-171 | A2Z200_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QPI6 | 1e-171 | I1QPI6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q67TR8 | 1e-171 | Q67TR8_ORYSJ; Basic helix-loop-helix (BHLH)-like protein | ||||
STRING | ORUFI09G13650.1 | 1e-171 | (Oryza rufipogon) | ||||
STRING | OS09T0455300-01 | 1e-171 | (Oryza sativa) | ||||
STRING | ONIVA03G20840.1 | 1e-171 | (Oryza nivara) | ||||
STRING | ORGLA09G0096500.1 | 1e-171 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 4e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g28210.1 |
Entrez Gene | 4347252 |