|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os09g27450.1 |
Common Name | HOX11, LOC4347205, OJ1596_C06.7, Os09g0447000, OsJ_028406 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
HD-ZIP |
Protein Properties |
Length: 363aa MW: 37833.1 Da PI: 6.627 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os09g27450.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.8 | 7.7e-18 | 176 | 230 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
LOC_Os09g27450.1 176 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 230
788899***********************************************98 PP
|
2 | HD-ZIP_I/II | 127.1 | 7.6e-41 | 176 | 266 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
LOC_Os09g27450.1 176 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 266
69*************************************************************************************9.555 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MELGLSLGEA MADAGRELVL GLGMGRREEA AEAGRRDHEV RRELEFGSMS SRCGGSSPEP 60 TVRLTLLPMV PGLGLPWPPP PPPSSESRHL EASTRGFDVN RPPSSGGGGG GGGAEEEQDD 120 VAGAALSSSP NNSAGSFPMD DFSGHGLGGN DAAPGGGGGD RSCSRASDED DGGSARKKLR 180 LSKEQSAFLE ESFKEHSTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY 240 LKRCCETLTE ENRRLQKELA ELRALKTVHP FYMHLPATTL SMCPSCERVA SNSAPATASS 300 AATSSTAAPP AAPSSGGIAA TSSSAAAAAA PDHRPSSFAA LFSSPRGFPL SVAPQAQPPT 360 SS*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 224 | 232 | RRARTKLKQ |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP005575 | 0.0 | AP005575.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1596_C06. |
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |