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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os09g25060.1 |
Common Name | LOC4347069, Os09g0417600, OsJ_29378, OSNPB_090417600, P0014G10.39 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 328aa MW: 34780.2 Da PI: 8.0535 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os09g25060.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 93.3 | 1.8e-29 | 165 | 224 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
LOC_Os09g25060.1 165 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 224
58***************************99****************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009617 | Biological Process | response to bacterium |
GO:0009620 | Biological Process | response to fungus |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0010200 | Biological Process | response to chitin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MDAAWRGGVG CSPVCLDLCV GLSPVREPSA ARHELLDRPA GCRGGGDSKS MTNDEAKIVE 60 AKVTQMSEEN RRLTEVIARL YGGQIPRLGL DGSASPPRPV SPLSGKKRSR ESMETANSCD 120 ANSNRHQGGD ADHAESFAAD DGTCRRIKVS RVCRRIDPSD TSLVVKDGYQ WRKYGQKVTR 180 DNPSPRAYFR CAFAPSCPVK KKVQRSAEDS SLLVATYEGE HNHPHPSPRA GELPAAAGGA 240 GGSLPCSISI NSSGPTITLD LTKNGGAVQV VEAAHPPPPP DLKEVCREVA SPEFRTALVE 300 QMASALTSDP KFTGALAAAI LQKLPEF*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.25606 | 0.0 | callus| flower| leaf| panicle| root| stem |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21961049}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK059966 | 0.0 | AK059966.1 Oryza sativa Japonica Group cDNA clone:006-211-F11, full insert sequence. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Peng Y,Bartley LE,Canlas P,Ronald PC
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] - Chujo T, et al.
OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] - Yokotani N, et al.
WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance. J. Exp. Bot., 2013. 64(16): p. 5085-97 [PMID:24043853] - Liu J, et al.
Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense. Plant Physiol., 2016. 171(2): p. 1427-42 [PMID:27208272]
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