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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os09g25040.1 |
Common Name | Os09g0417400, P0014G10.34 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 500aa MW: 49079.8 Da PI: 7.0636 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os09g25040.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.6 | 1.7e-11 | 261 | 309 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq
LOC_Os09g25040.1 261 HSIAERLRRERIAERMKALQELVPNA--NKLMQTDKASMLDEIIDYVKFLQ 309
99***********************7..48888*****************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0048767 | Biological Process | root hair elongation |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD LAAGKAAEDD 60 AEGMHHHHHQ QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ MVLQQLADLR 120 QGHHMMLQGL GGRSPAGGGG GGGDGGLLLP LTLGSGGSGG DVQALLKAAA ANSAGGGDAG 180 GVYGGGFAGS LHQQQQHFQP HPQTAPTIPT QSFGGGGGGG GGGTASGGGA AQPQAGAAGG 240 GAPAPPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKLM QTDKASMLDE 300 IIDYVKFLQL QVKASTYTKL LIHVLSMSRL GGAAAVAPLV ADMSSEGRGG GAANGGAPAA 360 AGSDSLTVTE QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVVAAAQ 420 QFPAGLGAAA AAAHHHQLSA AAAAAAMRGH LPGLNADGSV PASPSMSVLT AQSAMANGGG 480 GAADGEGSQL KDAASVSKP*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 130 | 138 | GGRSPAGGG |
2 | 265 | 270 | RLRRER |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005784 | 0.0 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. |
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |