PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g01470.1
Common NameOSJNBa0066B16.48, P0414D03.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 321aa    MW: 35183.8 Da    PI: 10.3098
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g01470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.16.6e-10110201397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                        +r ws  De+ +L ++ + ++ +g  +  + ++++  + +s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l+ k
  LOC_Os09g01470.1 110 RKRSWSRADELRILEAMANHANAHG-GALPEASDLFAALASSLErGDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQLCGK 198
                       6899*******************99.556666667777776665269999****************9988...6777778888899******* PP

            DUF573  95 iWg 97 
                       +Wg
  LOC_Os09g01470.1 199 VWG 201
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-15111201IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSSPPVHE AQQAAARRRS ARTKKPPEEE  60
AAGSQPQPKT RPSPASKASK AKVLLLLGDG EPKKKPAPNP TPTQKRSNKR KRSWSRADEL  120
RILEAMANHA NAHGGALPEA SDLFAALASS LERGDADLPK LADKVHKLKR WYDNARLPQR  180
CPTDDDDDTR RLFQLCGKVW GPPSTVLRTS PRQRHKVVGV LVQGNGANPQ PAAALKVKEK  240
RVRRELSELY VLYPCLAQEV KAHANEYGEL IGTAFQFIGD DEARCYDDRY RKMLVDKLNM  300
KKEHADVTKS LLCTLAGYIN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192111KKKPAPNPTPTQKRSNKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.975750.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69K16
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g01470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0uncharacterized protein LOC9269165
TrEMBLQ69K160.0Q69K16_ORYSJ; Uncharacterized protein
STRINGORUFI09G00140.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010