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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os08g43550.1 |
Common Name | LOC4346246, OJ1479_B11.7, Os08g0549000, OsJ_00784 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
MYB |
Protein Properties |
Length: 244aa MW: 26999.1 Da PI: 8.9451 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os08g43550.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl
LOC_Os08g43550.1 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 57.1 | 4.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++
LOC_Os08g43550.1 67 RGNFTADEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRSPCCEKE HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLGRG 120 IDPVTHRPVN AAAATISFHP QPPPTTKEEQ LILSKPPKCP DLNLDLCISP PSCQEEDDDY 180 EAKPAMIVRA PELQRRRGGL CFGCSLGLQK ECKCSGGGAG AGAGNNFLGL RAGMLDFRSL 240 PMK*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.9336 | 0.0 | callus| leaf| panicle| root| seed| stem |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003912 | 0.0 | AP003912.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1479_B11. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |