PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g42440.1 | ||||||||
Common Name | LOC4346162, Os08g0536300, OSJNBa0033D24.33, OSNPB_080536300, P0665C04.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 489aa MW: 51863.8 Da PI: 6.63 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.6e-06 | 14 | 55 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++e + l+C+ + lC C + H H LOC_Os08g42440.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55 7899*******9******************999545555555 PP | |||||||
2 | CCT | 63.1 | 8.4e-22 | 435 | 478 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RY+eK+k+R++eK+irYesRK +A++R+RvKGrFvk++ LOC_Os08g42440.1 435 RDSAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKSN 478 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1E-11 | 13 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.883 | 13 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-8 | 16 | 60 | No hit | No description |
Pfam | PF06203 | 4.2E-16 | 435 | 477 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.19 | 435 | 477 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL 60 CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL 120 DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG RRLKGEALGH 180 QLAEMARREA ETAHPHTQPH SDLSPRTPRR TSAAASGRLQ EKQAPPPLPH AAATAAPLPY 240 TSLLMMAPAN CTELMENNRV GDEDENVLWE STAPSVPPTQ IWDFNLGKSR DHNENSALEV 300 GFGSNNGGFM IKSYNDMLKE ISSGTTKDLE DIYDSRYFAA AEDIMSTNVC QLSSKNPSTR 360 SNKRKASSCA STIDGPTTST SHVPAASGAL GGSSNDRGSA LPKEISFCDQ TVVPTGADQR 420 PCTIKIDSET LAQNRDSAMQ RYREKKKNRR YEKHIRYESR KLRADTRKRV KGRFVKSNGA 480 PDDVSNGG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25599 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32984931 | 0.0 | ||||
Expression Atlas | Q6Z1G2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g42440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g42440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099722 | 0.0 | AK099722.1 Oryza sativa Japonica Group cDNA clone:J013088K05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649825.1 | 0.0 | zinc finger protein CONSTANS-LIKE 14 | ||||
TrEMBL | Q6Z1G2 | 0.0 | Q6Z1G2_ORYSJ; Os08g0536300 protein | ||||
STRING | OS08T0536300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4504 | 20 | 26 | Representative plant | OGRP5453 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 9e-24 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g42440.1 |
Entrez Gene | 4346162 |