PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g41960.1 | ||||||||
Common Name | LOC4346135, Os08g0531900, OSNPB_080531900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20764.8 Da PI: 10.1593 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4.1e-27 | 17 | 66 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s LOC_Os08g41960.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66 8***********************************************86 PP | |||||||
2 | K-box | 17 | 2.5e-07 | 128 | 170 | 43 | 85 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++L++ eL+ Le+++ ++l+ +++k + + + + ++ kk k LOC_Os08g41960.1 128 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 170 799********************99988777777777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-35 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.291 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-29 | 10 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.24E-31 | 13 | 78 | No hit | No description |
Pfam | PF00319 | 3.0E-26 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR 60 LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRVDCN IQLRQKERSD DPVPKINHIT 120 QCVLESNVNE LNIAELRGLE EAMTNALTVV KNKLMMKVAS VLPQSEKKRK SCSISEPRSG 180 VSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 10 | 101 | 3 | 84 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RRRKRGKV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57419 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116012345 | 0.0 | ||||
Expression Atlas | A0A0P0XI85 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g41960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g41960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242980 | 0.0 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649438.1 | 1e-132 | MADS-box transcription factor 51-like isoform X2 | ||||
TrEMBL | A0A0P0XI85 | 1e-131 | A0A0P0XI85_ORYSJ; Os08g0531900 protein | ||||
STRING | OS08T0531900-01 | 1e-132 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 3e-28 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g41960.1 |
Entrez Gene | 4346135 |