PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g41320.1 | ||||||||
Common Name | LOC4346087, OJ1191_A10.109, Os08g0524800, OSNPB_080524800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 406aa MW: 42384 Da PI: 6.6745 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 214 | 261 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq LOC_Os08g41320.1 214 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 261 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-16 | 208 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-10 | 208 | 265 | No hit | No description |
PROSITE profile | PS50888 | 15.301 | 210 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-16 | 210 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 214 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-10 | 216 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA IVAPGGGGGG GDCGLDKLCG DPGFAERAAR 60 LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAANAK 120 KRKSTAAAAA AAKGKGKEPP VGEEKESDGK RCKTGNGEKE SSVKPKAEQA GSDSSVEDGG 180 GGGQKQGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC 240 NKVIGKALML DEIINYVQSL QRQVEFLSMK LATVNPLDFS NLPTLLQKDM FQACGPSASS 300 VFSLESSNSA FRFAEQGDVF QQFAQNSMES QCTLNQLDLA LSQATNAAQY AFQDGTAGAN 360 LQQRNFWEDD LQSVFHIENG QSQENGVSAP NFHGQQQAGH MKMEF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10830 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32984500 | 0.0 | ||||
Expression Atlas | Q84QW1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g41320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g41320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099291 | 0.0 | AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648582.1 | 0.0 | transcription factor BHLH094-like | ||||
TrEMBL | Q84QW1 | 0.0 | Q84QW1_ORYSJ; BHLH transcription factor(GBOF-1)-like | ||||
STRING | OS08T0524800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 4e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g41320.1 |
Entrez Gene | 4346087 |