PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g39630.1 | ||||||||
Common Name | LOC4345984, Os08g0506700, OsJ_27873, OSJNBa0025J22.40, OSNPB_080506700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 41632.3 Da PI: 8.233 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.3e-13 | 330 | 375 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq LOC_Os08g39630.1 330 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 375 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.281 | 324 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-16 | 327 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-12 | 328 | 379 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 329 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 330 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 330 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF 60 SRFLADHQIR DKSPPATAAA AAAAAHFPDD PTMATQHHHQ QQMMFQHHPQ QMASVEGLYR 120 TVSSTGIDAA TAAANAAGGG GGGLLRQSSS PAGFLNHLNM DNGYGSMLRA GMAAAGGGVG 180 FRNGANAAAA ADSPGGSGGR LKGQLSFSSR QGSLMSQISE MDSEELGGSS PEGAGGGGGG 240 GGRGYLSGYP MSSGWEESSL MSDTNISGVK RQRDSSEPSQ NGGGGGGLAH QFSLPKTSSE 300 MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMDKQTNT 360 ADMLDLAVDY IKDLQKQVKG LNDSRANCTC SAKHQQYSG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5311 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985315 | 0.0 | ||||
Expression Atlas | Q6Z3R6 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g39630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g39630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100106 | 0.0 | AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650699.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | Q6Z3R6 | 0.0 | Q6Z3R6_ORYSJ; Os08g0506700 protein | ||||
STRING | OS08T0506700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g39630.1 |
Entrez Gene | 4345984 |