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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os08g37810.1 |
Common Name | LOC4345874, Os08g0484700, OSNPB_080484700, P0419H09.21 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 316aa MW: 35062.4 Da PI: 7.708 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os08g37810.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.5 | 4.9e-20 | 29 | 113 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e
LOC_Os08g37810.1 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 113
*************************************999987777889*****************988776664......68*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MAQEAASAAA GEEGALPQRR RKSAPGQPWA HMETMHLLDA YEERWTRLRR GQLKAQQWEE 60 VAADVAARCA ASGAALRKTG TQCRHKLEKL RKRYRIEGAR PVTSLWPYFR RMERLERGPL 120 PVSSAFPPPP PAASPPAAAS DDDDDDEEDD EEEEEVEEPI PRNNTRSING ILRDSGGGGG 180 GFSGFAPRPP PQQPPPSFAM LSTAPPRKRV PYEAFQAKVA MADKVKEEEP PPVATRPGGG 240 TNEQLSAVLR DFGQGIMRLE RRRMEMQWEI DRGWKETEAR HNRMLLDAQR HLHEALAATP 300 PPLKKARREH GGDGS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005918 | 0.0 | AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |