PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g37290.1 | ||||||||
Common Name | LOC4345836, OJ1666_A04.16, Os08g0477900, OSNPB_080477900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 23972.9 Da PI: 7.7998 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.5e-13 | 21 | 67 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+l+P+a +++Ka+ L ++v+++++L LOC_Os08g37290.1 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67 58*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.929 | 18 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-11 | 21 | 68 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-13 | 21 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-11 | 21 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-14 | 21 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 24 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.3E-4 | 123 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVTDGECSAA AVRKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV 60 VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEDDDEGE RDEGCYVVGG GDRRWRRRVR 120 AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA 180 LSALRAALRT VLLNREELLA AAAAAATDGY KRPRFSPRCS SLT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | ERKRRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.73988 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZJC8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g37290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g37290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003917 | 0.0 | AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649548.1 | 1e-153 | transcription factor AIG1 | ||||
TrEMBL | Q6ZJC8 | 1e-151 | Q6ZJC8_ORYSJ; BHLH protein family-like | ||||
STRING | OS08T0477900-00 | 1e-152 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g37290.1 |
Entrez Gene | 4345836 |