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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os08g36700.1 |
Common Name | HSF20, HSFB4A, LOC107275533, Os08g0471000, P0461F06.21 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
HSF |
Protein Properties |
Length: 381aa MW: 41386.7 Da PI: 9.6379 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os08g36700.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 109 | 3.4e-34 | 26 | 123 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
HSF_DNA-bind 2 Flkklyeiledeelkelisws.eng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
Fl+k+y++++d+++++++sw+ ++g +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv e+ weF+++ F+kg
LOC_Os08g36700.1 26 FLTKTYQLVDDPATDHVVSWEdDDGgesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKG 109
9********************544478889****************************************999.........*********** PP
XXXXXXXXXXXXXX CS
HSF_DNA-bind 90 kkellekikrkkse 103
+k+ll++i+r+ks+
LOC_Os08g36700.1 110 EKQLLCEIHRRKSA 123
***********985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MEWEEESEAA RQKAAAASAS VVPAPFLTKT YQLVDDPATD HVVSWEDDDG GESASSFVVW 60 RPPEFARDIL PNYFKHSNFS SFVRQLNTYG FRKVVPERWE FANEFFRKGE KQLLCEIHRR 120 KSAAATWPPF PPPPPPFFAP RHFAAGAFFR HGDGMLHGRL GALVTTTERR HWFESAALPV 180 APSSRLLSQL GPVIAPARRA AATPEEEALM QENHRLLRGN AALVQELAHM RKLYSDIIYF 240 VQNHVRPVAP SPAAAAALHG LGVLRPPPAG GKAPASEVRG ASGRSATSSS SLTVAEDQPT 300 LLALRLPRTT EKIINEVSGG NGGGSTKLFG VHLSSADEQT SSGASRKRSP PQEQPPTSPA 360 PKRTLVVEHS ELRLSIVSPP *
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004693 | 0.0 | AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |