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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g33530.1 | ||||||||
Common Name | OJ1111_B08.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 264aa MW: 27557.1 Da PI: 5.652 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.6 | 2.2e-34 | 84 | 204 | 3 | 124 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaks 93 ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai lt +s +a ++ ++++++a+++ LOC_Os08g33530.1 84 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAApaF---AAAPPPADQHSSAMAA 173 689**********************************************************9955555233221...1111112222233444 PP TCP 94 aakskksqksaasalnlakesrakararare 124 aa s ++k +as ++ + s+a+ar r ++ LOC_Os08g33530.1 174 AAASAAKEKGEASSSSTTNASSARARNRDHD 204 4455555555555566666777777776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-32 | 85 | 199 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.087 | 85 | 143 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAAAAAVEGG 60 GGGGGGGAGG SPAAAAAATR RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA RDFFALQDKL 120 GFDKASRTVE WLLTQSKHAI NRLTLPDSAD AAAAPAFAAA PPPADQHSSA MAAAAASAAK 180 EKGEASSSST TNASSARARN RDHDGSSPVA PMDERGRRGV ELDWTAAAAA STEQPMDGLE 240 YYFQYYNHLE EIMSCDPTTT TDE* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZKS4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g33530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g33530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003868 | 0.0 | AP003868.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1111_B08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883271.1 | 0.0 | transcription factor TB1 | ||||
TrEMBL | A0A0E0QJD5 | 0.0 | A0A0E0QJD5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0XGC2 | 0.0 | A0A0P0XGC2_ORYSJ; Os08g0432300 protein | ||||
TrEMBL | Q6ZKS4 | 0.0 | Q6ZKS4_ORYSJ; Putative teosinte branched1 protein | ||||
STRING | ORUFI08G17540.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0432300-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-24 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g33530.1 |