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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
LOC_Os08g23880.1 |
| Common Name | LOC107275324, Os08g0327800, OsJ_26901, OSNPB_080327800 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
NAC |
| Protein Properties |
Length: 448aa MW: 49725.8 Da PI: 4.574 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LOC_Os08g23880.1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 61.3 | 3.1e-19 | 9 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90
l+pGf+F+P+de+lv+++L + +++ +++l + + d +v Pw+L ++ +++e++ yf +++d + r+ r+ + +g+W ++ ++
LOC_Os08g23880.1 9 LTPGFKFEPSDEQLVQFFLLPYLRELPVPLGGLVIRDDPRSVPPWKLFaRNGRGDEEDAYFLAPADGEG----RQARTCDggRGRWITQRLER 97
579***************************8888888**********8334445666779988887753....555543323899**999999 PP
NAM 91 evlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + ++++v k+ L ++ g+ + g +t Wvmhey++
LOC_Os08g23880.1 98 TGNLRlaggggsGEAVVFEKHRLNYHAGEGRCG-STGWVMHEYAV 141
88887889888777789*********9999997.9********86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MAAAKMAGLT PGFKFEPSDE QLVQFFLLPY LRELPVPLGG LVIRDDPRSV PPWKLFARNG 60
RGDEEDAYFL APADGEGRQA RTCDGGRGRW ITQRLERTGN LRLAGGGGSG EAVVFEKHRL 120
NYHAGEGRCG STGWVMHEYA VVKPAALGAR HRACHIAFTG HGQKRKRVPD GYVDVEDDGS 180
KASTNAAAAV PPSSTAAMSA CPSNVTYNQG CHISPEQSIE QHFPAEHNNI QIQQQAYYQS 240
QDHEQCQYSD EEKYLLQQIK QEQYYYNQQN CFLPGQGNQE LYYNDEQQQI FSLPEHQCSQ 300
EQYCHHDDQQ DCVLPEQHSQ ELHGYNNEEQ GYLLPPEPID QEEQALFVGG EPQHEQQPLT 360
STPRQALLDY DDGKLLPPVG VNGAIAIPPQ DAAVASNDDD GGQATEAPAA KMTAEEKKWF 420
MEELLTEGCW SGPLLFDQPY YGSALKN*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004759 | 0.0 | AP004759.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0670E08. |
| GenBank | AP005490 | 0.0 | AP005490.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01. |
| GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
