PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g20580.1 | ||||||||
Common Name | OSJNBa0070J19.6, OSJNBa0096K16.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 23746 Da PI: 10.5213 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.7e-05 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H LOC_Os08g20580.1 166 FKCSVCGRSFSSYQALGGHKTSH 188 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-5 | 165 | 192 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 166 | 193 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.2E-12 | 166 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0081 | 166 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAMAFLGQSR LYDGISWNSH LSMAFLVPPV SVATSAPSLS LPPPLPSSSL SLSLFSASRP 60 VAGAKAARVR RRRQVANGET EALHAAVLKE EEQQHEVEEA AVVTSSSATS GEEGGHLPQG 120 WAKRKRSRRQ RSEEENLALC LLMLALGGHH RVQAPPPLSA PVGAEFKCSV CGRSFSSYQA 180 LGGHKTSHRF KLPTPPASPV LAPASSEVQS PLAFSPRNSA AARI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7912 | 1e-152 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6UU08 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g20580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g20580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004458 | 0.0 | AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY360393 | 0.0 | AY360393.2 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence. | |||
GenBank | AY360394 | 0.0 | AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649250.1 | 1e-119 | zinc finger protein 1, partial | ||||
Swissprot | Q42430 | 2e-36 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | Q6UU08 | 1e-157 | Q6UU08_ORYSJ; Putative zinc finger transcription factor | ||||
STRING | ORGLA08G0084900.1 | 3e-96 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 9e-10 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g20580.1 |
Publications ? help Back to Top | |||
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