PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g40780.1
Common NameLOC107278250, OJ1579_C03.27, OJ1634_B10.103
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 424aa    MW: 44610.5 Da    PI: 7.2125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g40780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-0692112323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C  Cgk Fs++ +L  H+r+H
  LOC_Os07g40780.1  92 CRECGKLFSSWRSLFGHMRRH 112
                       ********************9 PP
2zf-C2H214.40.00011294316123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+Cp Cgk+F +   L  H  +H
  LOC_Os07g40780.1 294 YECPGCGKVFASYQALGGHRASH 316
                       99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.111335IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-41336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-51335IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-101335No hitNo description
PROSITE profilePS5015710.4081335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-1085112No hitNo description
SMARTSM003550.01490112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1890113IPR007087Zinc finger, C2H2
PfamPF139129.4E-591112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.95E-5291318No hitNo description
PfamPF139122.3E-11293318IPR007087Zinc finger, C2H2
SMARTSM003550.05294316IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45294321IPR007087Zinc finger, C2H2
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELGANGG VVGYGLRENP  60
KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SWRSLFGHMR RHASGGGGRN  120
HDDDDDDDVD VEDEFGGGEE EEIVAPAPAA VTVIAAPPRR RRRSMRVAAP APAPAPPRPV  180
LLGGFEKEQE DVALGLLMLS RDTGVWRSPV KAETFEKPEQ KKKKATAKQP PPLPLPRNGY  240
GYGYNSDEDS ALLQYGGDVA KSRKRRASYH SPNSISSKKK QQPRAAAPAK RTRYECPGCG  300
KVFASYQALG GHRASHKRIN TSCSAPKVSP ATAAAAAPAP EPSSETYASL STLSPSASPG  360
SAAAGIGDRK ANNKSSAEEE KFGGACSSDE LYAELELEQR SPAAAAGFLD LNFPPASSEV  420
GVN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H5B0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g40780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g40780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038400.0AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039150.0AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.10.0uncharacterized protein LOC107278250
TrEMBLQ8H5B00.0Q8H5B0_ORYSJ; ZPT4-4 (Zinc-finger protein)-like protein
STRINGORUFI07G22100.10.0(Oryza rufipogon)
STRINGOS07T0598800-000.0(Oryza sativa)
STRINGORGLA07G0162200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1267644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-12C2H2-like zinc finger protein