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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os07g36460.1 |
Common Name | BHLH164, LOC_07g36460, LOC9269572, Os07g0549600, OsJ_24663, P0534A03.125, UDT1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 235aa MW: 25674.9 Da PI: 4.834 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os07g36460.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.8 | 4e-13 | 66 | 111 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ e+ErrRR r+N ++ Lr ++Pk +K+sK ++L A+e+Ik+Lq
LOC_Os07g36460.1 66 NLEAERRRRGRLNGNIFALRAVVPKI-----TKMSKEATLSDAIEHIKNLQ 111
5689*********************7.....7******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007275 | Biological Process | multicellular organism development |
GO:0005634 | Cellular Component | nucleus |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MPRRARARGG GGGGGEEVKV EDDFIDSVLN FGGGGGGEED GDDGEEEQQQ QQAAAAAMGK 60 EFKSKNLEAE RRRRGRLNGN IFALRAVVPK ITKMSKEATL SDAIEHIKNL QNEVLELQRQ 120 LGDSPGEAWE KQCSASCSES FVPTENAHYQ GQVELISLGS CKYNLKIFWT KRAGLFTKVL 180 EALCSYKVQV LSLNTISFYG YAESFFTIEV KGEQDVVMVE LRSLLSSIVE VPSI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed at the late premeiosis and meiosis stages in both the anther wall and the microspores. After meiosis, expressed in the tapetum, connective tissue, and vascular bundles. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. |
Phenotype -- Disruption Phenotype ? help
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Source |
Description |
UniProt | DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum to differentiate and pollen to mature. {ECO:0000269|PubMed:16141453}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK242516 | 0.0 | AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence. |