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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os07g05010.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 419aa MW: 44503.5 Da PI: 4.5754 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os07g05010.3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 56.5 | 5e-18 | 233 | 279 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq
LOC_Os07g05010.3 233 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 279
6*************************8.....6******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MDAGATARSS SSSAMMMNQK KPLLSDGELV ELLWQDGGVV AHAQTRHRSS DVLARSGVTG 60 EEETASAWFA DGGGGGGGDD DALGLGMGRD IYSQLWHSFA NVDGHAAGAL ALATPTPTPR 120 AAARSDDVSS RLDEADLSIC GSNAVVAPAL PADDDDDIDA AAPREEEEEE EEGPGAARAA 180 GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA AEVHNLSERR 240 RRDRINEKLR ALQELVPHCN KTDKASILDE AIEYLKSLQM QVQIMWMTTG IVPMMFPGTH 300 QLMPPMGMGL NTACMPGAQA QGLNQMQRTT YYMNNSLPNQ MPQIPSPAMN APSVPDDMQN 360 DNRIRGPRNP FLHCNDTLTA TAQVPGLFTY GSQIAEQNEI QELLSGAVIP SSSDGTIK*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 224 | 241 | KRRTRAAEVHNLSERRRR |
2 | 237 | 242 | ERRRRD |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN400276 | 0.0 | JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]
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