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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os07g04700.5 |
Common Name | LOC4342365, OJ1417_E01.122, Os07g0139500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
MYB |
Protein Properties |
Length: 835aa MW: 92424.6 Da PI: 10.1846 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os07g04700.5 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 156 | 248 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47
+++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++
LOC_Os07g04700.5 156 KQPWSDVEKEKLAKGIKQQYQEalilnsinkgsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 248
79****************99999***************************************************99888************97 PP
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2 | Myb_DNA-binding | 29.7 | 1.5e-09 | 256 | 300 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q
LOC_Os07g04700.5 256 NAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 300
68**************************************99995 PP
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3 | Myb_DNA-binding | 43.6 | 6.7e-14 | 310 | 353 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
W +eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l
LOC_Os07g04700.5 310 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 353
6*****************99.*********.************975 PP
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4 | Myb_DNA-binding | 51.3 | 2.7e-16 | 361 | 406 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l
LOC_Os07g04700.5 361 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 406
8******************************.************986 PP
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5 | Myb_DNA-binding | 31.7 | 3.6e-10 | 413 | 457 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47
g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+
LOC_Os07g04700.5 413 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 457
68*****************88.****945777.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 835 aa
Download sequence Send
to blast |
MNTKTEASKE GSGNIFGNEL DEEFDAEKHN KEATTRTGFP KAALLLVDAL KKNRACQKFI 60 RRKMITIEAK IEENKDLRDR VKCLLDYQLS CRKAFGKILC QKEDPRVRLI SSRKPCAQST 120 KNKDKKTPAL FLGPADNPHV SKYKMVLKQL PMSLQKQPWS DVEKEKLAKG IKQQYQEALI 180 LNSINKGSST GDFSAVDMAY ALTNTAGNFE VTPESLRSVL PLINWDKIAA MYLPGRSGAE 240 CESRWLNFDD PLISHNAWTA REEKRLILTV QQQGMNNWIN IAVTLGTHRT PFQCLVRYQR 300 SLNHCILNKD WAEEEDLQLQ AAVNTFGTNW QLVSASMDGR TGNQCSNRWR KTLNPERSRV 360 GRWSLDEDKR LMVAVKLFGS GSWNKIAQFI PGRTQSQCNE RWRNVLDPDI DLGEWRPEED 420 SILLASVDEF GPCWSKIAGA KIPHRTDNMC LRRWRKLCQD KLPSVKAAQQ IKKSILQCNF 480 VDRETERPAI GPSDLMPLVR SKVDGSDENT VSAKVRKPRK RSRIPCEDNV LPGDTSNSSP 540 SMNLPLSESI DAEAAVNTTT ANSKKKPSRS RSKKQTDENL AVCDVNNSSN CSSGARKRKR 600 SITDKNQVVQ KKMKGSISGD NEAVVETVGT ISADNEVATK RKTGSTSVGE EGTTKKTTRG 660 SLSGKGEVNK RMRGSISGVQ KGATKQRMRG SVSTDNHGAV MKSKRAPSRK SAEENSKADS 720 MANAAFGSDL PTVASEDRDA NNGNVKNGRL KSMPRPKQIN MTEGSADKFS TSTRLADCMS 780 FGRINGSSRV ARHLCVSVKP LSNMIQSNGP SDVSAKDPTS AETDPTSVEN SNTA*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.49202 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |