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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os06g16400.2 |
Common Name | OsJ_20959 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 438aa MW: 47089.4 Da PI: 6.3661 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g16400.2 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29 | 1.9e-09 | 269 | 317 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq
LOC_Os06g16400.2 269 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 317
58*************************9....556*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALTSMA NPFPIPPGLW 60 NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG 120 IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG 180 GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK 240 SSGKQIKDNA GSPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT 300 GKAVMLDEII NYVQSLQRQV EFLSMKLASV NPTLDFNIER ILSKDIFQCR GTTASSAFGF 360 FPDIVHPRLH PPKYTQVGMP SIVNPTDAFG RVIHAPLGTN SAFKEPKHQM PNNLNGEFQD 420 VIEMPFTHDH HGSNDQP*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.32526 | 0.0 | callus| flower| leaf| panicle| seed| stem| vegetative meristem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK103853 | 0.0 | AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence. |