|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os06g12210.1 |
Common Name | BHLH172, BU1, ILI4, LOC4340551, Os06g0226500, OsJ_20669 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
bHLH |
Protein Properties |
Length: 88aa MW: 9746.99 Da PI: 9.335 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g12210.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 24.9 | 3.7e-08 | 15 | 54 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+iN+ +++L++llP++ + ++ s L++++ YIksL
LOC_Os06g12210.1 15 EINELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSL 54
7**************7567777799999***********9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009741 | Biological Process | response to brassinosteroid |
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway |
GO:0040008 | Biological Process | regulation of growth |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0046983 | Molecular Function | protein dimerization activity |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in phloem of leaf blades and sheaths, lamina joints, filaments before anthesis, vasculare bundles of the ovule, lemma and palea, and embryos. {ECO:0000269|PubMed:19648232}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1 (By similarity). {ECO:0000250}. |
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1. {ECO:0000269|PubMed:19648232}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By brassinolide. Repressed by abscisic acid (ABA). {ECO:0000269|PubMed:19648232}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK071601 | 1e-146 | AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence. |
GenBank | CT832284 | 1e-146 | CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Tanaka A, et al.
BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice. Plant Physiol., 2009. 151(2): p. 669-80 [PMID:19648232] - Carretero-Paulet L, et al.
Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae. Plant Physiol., 2010. 153(3): p. 1398-412 [PMID:20472752] - Sui P, et al.
H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice. Plant J., 2012. 70(2): p. 340-7 [PMID:22136623]
|