|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os06g09370.3 |
Common Name | LOC4340382, P0698A06.26-2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
bHLH |
Protein Properties |
Length: 402aa MW: 42795.1 Da PI: 5.6237 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g09370.3 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.5 | 3.8e-11 | 250 | 295 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR++i +++ +L+ l+P++ K +Ka++L + ++Y+k Lq
LOC_Os06g09370.3 250 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 295
99***********************7.....5******************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG AQNVAMLNKT 120 SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ EQNIRNIPLP 180 TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG NSANAKPRTR 240 ARRGQATDPH SIAERLRREK ISERMKNLQV LVPNSNKADK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF EQEVVKLMET 360 SIISAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K*
|
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.8790 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK062127 | 0.0 | AK062127.1 Oryza sativa Japonica Group cDNA clone:001-045-D10, full insert sequence. |