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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os06g09370.1 |
Common Name | LOC4340382, Os06g0193400, OsJ_20430, OSNPB_060193400, P0698A06.26-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 479aa MW: 50725.8 Da PI: 5.0033 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g09370.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.1 | 4.8e-11 | 327 | 372 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR++i +++ +L+ l+P++ K +Ka++L + ++Y+k Lq
LOC_Os06g09370.1 327 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 372
99***********************7.....5******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSTSGT 120 FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL 180 DAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AIASLHDSKE FLNGGSIPSF GTVLQALGAG 240 GLKAAQQEQN IRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHNSEY PINHSSDVEP 300 QANSAPGNSA NAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQVLVP NSNKADKASM 360 LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST ISQGPPDMPD 420 SEDSSAFEQE VVKLMETSII SAMQYLQNKG LCLMPIALAS AISNQKGMAA AAAIPPEK*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.8790 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK065667 | 0.0 | AK065667.1 Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence. |