|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os06g06900.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
bHLH |
Protein Properties |
Length: 314aa MW: 34138.1 Da PI: 6.1326 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g06900.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 51.1 | 2.5e-16 | 107 | 153 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq
LOC_Os06g06900.1 107 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 153
6*************************7.....5******************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007623 | Biological Process | circadian rhythm |
GO:0009409 | Biological Process | response to cold |
GO:0010114 | Biological Process | response to red light |
GO:0010154 | Biological Process | fruit development |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0048440 | Biological Process | carpel development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MDEQRGRGGF DELVLLHQQQ EQRRRREQQQ EEEEEEEVRR QMFGAVVGGL AAFPAAAAAL 60 GQQQVDCGGE LGGFCDSEAG GSSEPEAAAG ARPRGGSGSK RSRAAEVHNL SEKRRRSKIN 120 EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPS YLSGALEPAQ 180 ASQMFAALGG NNVTVVHPGT VMPPVNQSSG AHHLFDPLNS PPQNQPQSLI LPSVPSTAIP 240 EPPFHLESSQ SHLRQFQLPG SSEMVFHGEI MPKHHLSSHQ ESLPGNEMNS IRKESSMLNT 300 NNFDGVSLSK EQS*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK243447 | 0.0 | AK243447.1 Oryza sativa Japonica Group cDNA, clone: J100069B16, full insert sequence. |