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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os06g06360.1 |
Common Name | LOC4340188, Os06g0158100, OSNPB_060158100, P0046E09.34, P0702F05.14 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 392aa MW: 41403.5 Da PI: 6.1909 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g06360.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 89.4 | 3.1e-28 | 144 | 204 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++k+v+rs+ d v+++tY+g H+++
LOC_Os06g06360.1 144 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 204
8***************************98889**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQGTLARAMG 60 IARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK 120 RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT 180 KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV 240 ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG CNNFSSPPFV 300 SPAGSAAGES YFSMEHSYEP RGGGGHFVMS RGDSSELHEV VSAAASSSAV VDPAAAAGGF 360 DYPLYHGEVD PHLPFPPLFG HASMYGQYRD A*
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Function -- GeneRIF ? help
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- OsWRKY71 might function as a transcriptional regulator in rice defene signaling pathways.
[PMID: 16919842]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK241919 | 0.0 | AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence. |
GenBank | AK287985 | 0.0 | AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence. |
GenBank | AY676932 | 0.0 | AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds. |