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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os05g50610.1 |
Common Name | LOC4339739 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 504aa MW: 54999.6 Da PI: 9.2857 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g50610.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 94.8 | 6.1e-30 | 188 | 244 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vk+s +p sYYrCt ++C vkk+vers++dp++v++tYeg+H+h+
LOC_Os05g50610.1 188 EDGYRWRKYGQKAVKNSSYP-SYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHP 244
8*******************.9***********************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MSGPGGGGHG LYEDHPAAAG FLPFDHDDDV VASFFFGRSA ASGGGAGAGA GAGDDDGVGL 60 ITPYSSITDY LQGFLQDPVY ASSPLGGDAA VKHETVVDHP SQAGGVAAAP ATPNSSVLSS 120 SSEAAGGDDL RRCKKGRRPE DEEEEEIDDE GSAVQSCKTN KMKNKKGAKK EREPRVAFMT 180 KSEVDHLEDG YRWRKYGQKA VKNSSYPSYY RCTAPRCGVK KRVERSEQDP SMVITTYEGQ 240 HTHPSPVSYH MHRQQGLMHV SARGVMPGAA GAYQFGAPPP PLLGFDEALA ARSQDTVLVS 300 QEDRLSQQQR SLYYRVDVQS CWAADRSRAH NCITKGKRKP GLGPNNTGAT WELGRNPKTH 360 RSRLAPGRTP HQQDPLRLLQ RLGGDYLYRA RRGVHFTHTT LLTRITQPVG ISHVGRPPSF 420 HDKAFPKPIQ VYHMPTRGVP DQQQESVLKC ESGKTVHPAQ DVQRWLALLE IWSLILEILA 480 LRVFGLRNYT RNGTTQQTAK MKP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY341857 | 0.0 | AY341857.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |