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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os05g49620.1 |
Common Name | LOC4339665, Os05g0571200, OsJ_19612, OSNPB_050571200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 278aa MW: 29872.4 Da PI: 5.6222 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g49620.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 82 | 5.9e-26 | 105 | 165 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC+++k+v+r++ dp +++++Y g+H++
LOC_Os05g49620.1 105 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 165
58***************************98999*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS 60 CFPPPEHPPP AAGNAGRDAA FKKRKGMAKV RRQVRVTSVQ DTASLDDGLS WRKYGQKDIL 120 GAKYPRAYFR CTHRHTQGCN ATKQVQRADG DPLLFDVVYL GDHTCGQAAV AAAAQSAPPE 180 HAGQEQQRQS SLLAAGTEGI HQQVVAEPMA APFLFTSTAA GGVDDGYFSF ISPANSDCQF 240 SSDFSAGSVG VDMDHEARFE DLFSSTLEFF QSEIQNL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108389 | 0.0 | AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence. |