PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os05g34310.1 | ||||||||
Common Name | LOC4338800, OJ1123_C08.8, Os05g0415400, OsJ_18554, OSJNBa0084P24.1, OSNPB_050415400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 33889.2 Da PI: 4.6038 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146 | 2e-45 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrFhPtdeelv +yL+++++g ++++ +i++v+iy+++Pw+Lp+++ +e+ewyfF+ rd++y+++ r++r+++sg+Wkatg+dk+v LOC_Os05g34310.1 10 LPTGFRFHPTDEELVINYLQRRATGLSCPI-PIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPVQ 101 699***************************.88***************76667999************************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ v +kk Lvfy gr p +kt+W+mheyrl LOC_Os05g34310.1 102 VAnmQSTPVAMKKALVFYVGRPPMETKTTWIMHEYRL 138 98667777***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-56 | 3 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.419 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-24 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MAMQLSLPVL PTGFRFHPTD EELVINYLQR RATGLSCPIP IIADVEIYNF NPWELPSMAL 60 FGEHEWYFFT LRDHRYPNSV RPSRSAASGF WKATGTDKPV QVANMQSTPV AMKKALVFYV 120 GRPPMETKTT WIMHEYRLTN TGGSTASHPS LSSSTAHPSV KLDEWVLCKI FNKSPEPDNT 180 APPSNVVSRL QCSPPLPPPA APPGNYPPLP VGATNDGGVF AGAGDMLFTI QEHQEGTPSM 240 LPPIPNLEPP AATIGNSSLN GTAAAAAAAD GHGRLEEEDT SAYTFTDQEM EQMLMDLMDQ 300 DFFGNDQPQE * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-58 | 1 | 173 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-58 | 1 | 173 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-58 | 1 | 173 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-58 | 1 | 173 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3ulx_A | 2e-58 | 10 | 176 | 15 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-58 | 1 | 173 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-58 | 1 | 173 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.50016 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32992539 | 0.0 | ||||
Expression Atlas | Q6AT85 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os05g34310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os05g34310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107330 | 0.0 | AK107330.1 Oryza sativa Japonica Group cDNA clone:002-126-F03, full insert sequence. | |||
GenBank | EU846999 | 0.0 | EU846999.1 Oryza sativa Japonica Group clone KCS021f05 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638459.1 | 0.0 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 3e-68 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | Q6AT85 | 0.0 | Q6AT85_ORYSJ; Os05g0415400 protein | ||||
STRING | OS05T0415400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16207 | 12 | 12 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-65 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os05g34310.1 |
Entrez Gene | 4338800 |