PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g11070.1 | ||||||||
Common Name | Os05g0199800, OSNPB_050199800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 44202.7 Da PI: 9.9993 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.2e-11 | 236 | 280 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f Lr++lP+a +K +Ka++L +A +Y++ L LOC_Os05g11070.1 236 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 280 7789*********************9.....9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-16 | 229 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.434 | 231 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-10 | 233 | 285 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 235 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-9 | 236 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ 60 QQLSQIYMLM DMEEHDHQYA TPPSPSSSSF RSFSAGTTTT TTSRDDNSSL MLAAAAASCH 120 HQTTEVSSQI LLPRPGQAAR RSSGGHGAAA AATAFRPYSR YLGPKKHLLR RPGAATTATG 180 GGGGQRAFKK AISVLSKIHA ARLAQYYQIM EMAARASPAA TAGGGGGENQ QLQLQHVLSE 240 RKRREKLNDS FKALRDVLPP ATKKDKASVL MRAKDYVNVL KARIAELEEK NRKLSESQQL 300 HAGDGDGERD DGPDDDKIEV NTSRSAADQG SSPNKCQELH LKIVLGSSSG CSAMDAVAGI 360 LQGLNEKRDV SLLATGHNSS SSSSSGRRRL LPRAKSSQQP AVRLQTLCKL SR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 244 | ERKRRE |
2 | 240 | 245 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55212 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115462558 | 0.0 | ||||
Expression Atlas | Q0DK30 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g11070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g11070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107675 | 0.0 | AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638951.1 | 0.0 | transcription factor PIF1 | ||||
TrEMBL | Q0DK30 | 0.0 | Q0DK30_ORYSJ; Os05g0199800 protein | ||||
STRING | OS05T0199800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Representative plant | OGRP10417 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 5e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g11070.1 |