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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os05g03900.1 |
Common Name | Os05g0129800, OSNPB_050129800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 247aa MW: 27598.2 Da PI: 7.5567 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g03900.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 33.3 | 9.5e-11 | 39 | 60 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS
WRKY 2 dDgynWrKYGqKevkgsefprs 23
D ++WrKYGqK++kgs++pr
LOC_Os05g03900.1 39 ADSWSWRKYGQKPIKGSPHPRY 60
69******************95 PP
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2 | WRKY | 46.6 | 6.9e-15 | 123 | 164 | 19 | 59 |
SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++r+YY+C+s gCp++k+v+++++d ++++itY+++Hnh+
LOC_Os05g03900.1 123 AVSRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 164
579******9877****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHPRY 60 HHLALIPHTY TAPNVLVISQ SFACALILYI TDNFTRIRLS DQLLVRFFSL YQSIIFALFV 120 DHAVSRGYYK CSSYRGCPAR KQVDKCRNDA SLLIITYTSD HNHDNYAATT TNSVQEQAHN 180 PDTSDPLSNG MSLAEVVTVA SSKLSGEEES CDFFDELEEL PVSASPLPSL SFMVQECSFS 240 DARTLL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK241799 | 0.0 | AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence. |
GenBank | AK288062 | 0.0 | AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence. |