|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os05g03740.1 |
Common Name | LOC4337690, Os05g0128000, OsJ_16984, OSNPB_050128000 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
Trihelix |
Protein Properties |
Length: 334aa MW: 36946.9 Da PI: 6.1586 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g03740.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63 | 6.8e-20 | 57 | 121 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
+W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf r+p qCk+kw+nl +r+k ++
LOC_Os05g03740.1 57 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGTE 121
7*************************************************************986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPPP PLLPADPPSL ERERLPQWSH 60 AETAAFLAIR ADLDHSFLST KRNKALWEAA SARLHALGFA RTPDQCKSKW KNLVTRFKGT 120 EGAAAVAAAG TDQMQGGQGG GAAARGSSSS FPFHDELRRI FDARVERARA LERKKVKGKD 180 PDDDHDGGGD GDEDDEEEAD QQVDEEDDGA SGDTTRAGSK KRRRKAAAAA RRTGSTGGVE 240 GEVEAMLREF MRRQIEMEER WMEAAEAREA ERRAREEEWR TAMVALGEER LALVRRWRER 300 EDAWRARAEE REERRHQLVA ALLAKLGAGD ASA*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC130598 | 0.0 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |