PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g02150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 353aa MW: 36473.6 Da PI: 8.5766 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.2 | 3.2e-37 | 99 | 157 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ LOC_Os05g02150.1 99 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 157 56789************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-39 | 82 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.789 | 102 | 156 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.3E-32 | 102 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 104 | 140 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MIFPPAFLDS SSWNDNNNNN HNQQQQQQHA HGHHQHHQVA AGCGGGGGGG DGNSHELLQQ 60 QSMIPGTLAD GGGGGGAVGP AKPMSMSERA RLARIPLPEP GLKCPRCDST NTKFCYFNNY 120 SLSQPRHFCR ACRRYWTRGG ALRNVPVGGG YRRHAKRAKP KPASAAGSAS AATTTAGSTP 180 AGSTTTTTTS STCATPNAPA LPAMLGGNLS ILPPLLRLAD FDAMSLGSTF SGMAAAAGKP 240 PPVDAAGCYS VGAATGLEQW RLQQMQSFPF FHAMDHQAAM AAPPPAMAMP GMFQLGLDGD 300 GHGSGGGEDG GELHHAMPSS KREGYPRGMY GDHHLAGGYT SYSSATTGNH LL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55878 | 0.0 | panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994142 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g02150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g02150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108933 | 0.0 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638255.1 | 0.0 | dof zinc finger protein DOF3.6 isoform X1 | ||||
TrEMBL | A0A0E0H8J7 | 0.0 | A0A0E0H8J7_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AXC7 | 0.0 | B8AXC7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G00860.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 2e-45 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g02150.1 |