PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g53540.4 | ||||||||
Common Name | GL2-2, LOC4337074, Os04g0627000, OSJNBb0060E08.16, ROC2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 782aa MW: 85337.4 Da PI: 5.6189 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 102 | 158 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ LOC_Os04g53540.4 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 158 688999************************************************995 PP | |||||||
2 | START | 203.9 | 6.5e-64 | 292 | 517 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetl 76 ela +a++elv++a+++ep+W+ + e + ++e+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d ++ +++ + LOC_Os04g53540.4 292 ELAVAAMEELVRMAQLDEPLWSVAPpldataaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIV 384 57899********************9**999999899999999999887779*******************************6666666666 PP SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 77 akaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +a tlev+s+g galq+m+ e+q++splvp R+++fvRy++q +g+w++vdvS+ds ++ p v +++++pSg+li++++ng+s LOC_Os04g53540.4 385 SRAITLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYS 473 6*****************************************************************98....7******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+ LOC_Os04g53540.4 474 KVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 517 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 82 | 157 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-20 | 89 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 99 | 159 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 100 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.34E-19 | 101 | 160 | No hit | No description |
Pfam | PF00046 | 6.3E-18 | 102 | 157 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 134 | 157 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.609 | 283 | 520 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.6E-35 | 285 | 519 | No hit | No description |
CDD | cd08875 | 6.86E-120 | 287 | 516 | No hit | No description |
SMART | SM00234 | 1.0E-58 | 292 | 517 | IPR002913 | START domain |
Pfam | PF01852 | 5.8E-54 | 293 | 517 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.3E-6 | 358 | 513 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.34E-23 | 538 | 771 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MERREIFQVA DLAHILRGKP VDHLQQPNLL DNHQFQQAFQ HQQQQHHLLD QIPATTAESG 60 DNMIRSRASD PLGGDEFESK SGSENVDGVS VDDQDPNQRP RKKRYHRHTQ HQIQEMEAFF 120 KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERHENSQLRS DNEKLRAENM 180 RYKEALSSAS CPNCGGPAAL GEMSFDEHHL RIENARLREE IDRISAIAAK YVGKPMVPFP 240 VLSNPMAAAA SRAPLDLPVA PYGVPGDMFG GGGAGELLRG VQSEVDKPMI VELAVAAMEE 300 LVRMAQLDEP LWSVAPPLDA TAAAMETLSE EEYARMFPRG LGPKQYGLRS EASRDSAVVI 360 MTHANLVEIL MDANQYAAVF SNIVSRAITL EVLSTGVAGN YNGALQVMSV EFQVPSPLVP 420 TRESYFVRYC KQNADGTWAV VDVSLDSLRP SPVLKCRRRP SGCLIQEMPN GYSKVTWVEH 480 VEVDDRSVHN IYKLLVNSGL AFGARRWVGT LDRQCERLAS VMASNIPTSD IGVITSSEGR 540 KSMLKLAERM VVSFCGGVTA SVAHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT 600 SFWLPVPPKR VFDFLRDESS RSEWDILSNG GIVQEMAHIA NGRDQGNCVS LLRVNSSNSN 660 QSNMLILQES CTDASGSYVI YAPVDVVAMN VVLNGGDPDY VALLPSGFAI LPDGPAHDGG 720 DGDGGVGVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI KAAVSGESNP 780 Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12432 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 31339096 | 0.0 | ||||
Expression Atlas | Q0J9X2 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g53540.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g53540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101645 | 0.0 | AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636340.1 | 0.0 | homeobox-leucine zipper protein ROC2 isoform X2 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | Q00RL2 | 0.0 | Q00RL2_ORYSA; OSIGBa0117N13.5 protein | ||||
STRING | ORUFI04G27800.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g53540.4 |
Entrez Gene | 4337074 |
Publications ? help Back to Top | |||
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