PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g52770.1 | ||||||||
Common Name | LOC4337015, Os04g0618600, OsJ_16185, OSJNBa0058K23.6, OSNPB_040618600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 21053.9 Da PI: 9.9689 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.7 | 8.8e-18 | 17 | 63 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq LOC_Os04g52770.1 17 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 63 59*************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-20 | 10 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.527 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-21 | 16 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-17 | 16 | 67 | No hit | No description |
Pfam | PF00010 | 4.8E-15 | 18 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-18 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEARRPTPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK 60 SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI RPSEPRPFQI THATQQRQSN 120 VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL 180 E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 26 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4548 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991898 | 0.0 | ||||
Expression Atlas | Q7FA23 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g52770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g52770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106689 | 0.0 | AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634978.1 | 1e-132 | transcription factor PIF1 | ||||
Refseq | XP_015634980.1 | 1e-132 | transcription factor PIF1 | ||||
TrEMBL | B8AUF9 | 1e-131 | B8AUF9_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PPY9 | 1e-131 | I1PPY9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7FA23 | 1e-131 | Q7FA23_ORYSJ; OSJNBa0058K23.6 protein | ||||
STRING | OS04T0618600-01 | 1e-131 | (Oryza sativa) | ||||
STRING | ORGLA04G0225800.1 | 1e-131 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9562 | 30 | 43 |
Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 1e-26 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g52770.1 |
Entrez Gene | 4337015 |