PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g50090.1
Common NameOSJNBa0086O06.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 363aa    MW: 38289.6 Da    PI: 7.191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g50090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-1393144155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  LOC_Os04g50090.1  93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1891168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-1491148No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1391148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23792143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1098149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP  60
EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP  120
ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS  180
AADQETPAAA AAAAAADGPP FARFFTYPQY VWCHNPAQDG GGGGGAAAEN RAGVADIEVS  240
LVETHASIRV MAARRPGQLL KMVAGLQALR LTVLHLNVTA LGSLALYSIS VKRFHGGKAI  300
ASLGPLGVFF LCALYLWYST TVVEEGCGMA TVDDIAAAVH HVLCIIDAEA ASQMLLAGEA  360
SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRKRRRR
27478RKRRR
37481RKRRRRAR
493104RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.514745e-64panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154602155e-64
Expression AtlasQ7XLY9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g50090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g50090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629810.0AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.10.0transcription factor bHLH94
TrEMBLQ7XLY90.0Q7XLY9_ORYSJ; OSJNBa0086O06.20 protein
STRINGORGLA04G0200200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-52bHLH family protein