PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g47040.1 | ||||||||
Common Name | LOC4336634, Os04g0557200, OsJ_15745, OSNPB_040557200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 560aa MW: 61025.4 Da PI: 4.8563 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.7e-13 | 383 | 429 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++++P+ K++Ka+iLe+++ Y+k L LOC_Os04g47040.1 383 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 429 57999**********************66......***************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.3E-51 | 21 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.834 | 380 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.32E-15 | 383 | 434 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 383 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 384 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 384 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-14 | 386 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MASAPPVQEE PLQPGTNHFR SLLAAAVRSI SWSYAIFWSI STSCPGVLTW NDGFYNGVVK 60 TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV 120 CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKSASIQTI ICIPFTSGVL 180 ELGTTDPVLE DPKLVNRIVA YFQELQFPIC LEVLMSTSPS PNETEDADIV SEGLITHNAI 240 EEGQMVVSDE CVSNANRDPI TMEIDELYSI YEDLDLDMDL DLDTVRFLED NGWPVNPSSF 300 QLVPASSTEA VAAAAAANDV DGVANSQVSC FMAWKSAKSN EMAVPVVTGI ESQKLLKKVV 360 DCGARMSTGR GSRAALTQES GIKNHVISER RRREKLNEMF LILKSIVPSI HKVDKASILE 420 ETIAYLKVLE KRVKELESSS EPSHQRATET GQQRRCEITG KELVSEIGVS GGGDAGREHH 480 HVNVTVTDKV VLLEVQCRWK ELVMTRVFDA IKSLCLDVLS VQASAPDGLL GLKIQAKFAC 540 SGSVAPGMIS EALQKAIGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 388 | 393 | ERRRRE |
2 | 389 | 394 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49810 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988367 | 0.0 | ||||
Expression Atlas | B7F427 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g47040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g47040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111704 | 0.0 | AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635094.1 | 0.0 | anthocyanin regulatory R-S protein | ||||
Swissprot | P13027 | 1e-175 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | B7F427 | 0.0 | B7F427_ORYSJ; Os04g0557200 protein | ||||
STRING | OS04T0557200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 1e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g47040.1 |
Entrez Gene | 4336634 |
Publications ? help Back to Top | |||
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