PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46384.1 | ||||||||
Common Name | Os04g0549500, OsJ_15687, OSNPB_040549500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 37110.9 Da PI: 7.9186 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.2 | 5.9e-11 | 31 | 76 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ v+ +G+ +W++I ++ + Rt+k+c++rw + LOC_Os04g46384.1 31 KGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVN 76 79******************99*****8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 8.8e-14 | 87 | 127 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ +++ +q+G++ W++Ia +++ gRt++++k++w LOC_Os04g46384.1 87 KFTAEEERVVIELQAQFGNK-WARIATYLQ-GRTDNDVKNFWS 127 79******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.357 | 26 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 28 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.86E-26 | 29 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-9 | 30 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-10 | 33 | 78 | No hit | No description |
Pfam | PF13921 | 1.8E-10 | 34 | 83 | No hit | No description |
PROSITE profile | PS51294 | 20.319 | 79 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 80 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-12 | 84 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-10 | 87 | 126 | No hit | No description |
Pfam | PF00249 | 5.4E-12 | 87 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001059 | developmental stage | J bicellular pollen stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MARAPGGVRR RSGRRGAGGG GAGGGGEALR KGPWMAEEDE VLLEHVRTHG PMDWSSIRSK 60 GLLPRTGKSC RLRWVNKLRP NLKSGCKFTA EEERVVIELQ AQFGNKWARI ATYLQGRTDN 120 DVKNFWSTRQ KRLARLLRGP LPAARPNKHN SGKGKAPSSS SLDSQTATFH QSSASLDQAS 180 LEGNSLGWQC REAAPFMGYD QACSGFFAFE GPLPLQLLPP ADGEASSSNA AQSAPPPLLF 240 DQPPYPLINF PGWPERYVDV GHGFVDAGAM DGLAYQELLP MVQSVPMIMP FFGMECAHDA 300 VKHGAFDDLP PNMFDDAVDQ PPPPPPPPPP PSPSPSPSRD DVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-25 | 29 | 132 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115459767 | 0.0 | ||||
Expression Atlas | Q0JB89 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46384.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46384 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663000 | 0.0 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AL731613 | 0.0 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634881.2 | 0.0 | probable transcription factor MYB58 | ||||
Swissprot | Q0JB89 | 0.0 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | A0A0D9ZNW2 | 0.0 | A0A0D9ZNW2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H3W5 | 0.0 | A0A0E0H3W5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0H3W8 | 0.0 | A0A0E0H3W8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PCC0 | 0.0 | A0A0E0PCC0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XW63 | 0.0 | A2XW63_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM04G20730.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI04G22380.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G19030.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 4e-57 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46384.1 |
Publications ? help Back to Top | |||
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