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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os04g45750.1 |
Common Name | Os04g0541100, OSNPB_040541100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 529aa MW: 57456.9 Da PI: 5.8914 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os04g45750.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 108.5 | 4.5e-34 | 280 | 364 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
LOC_Os04g45750.1 280 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 364
8*********************************************************************8.99**********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 529 aa
Download sequence Send
to blast |
MHAFAPPVPA PPPMSAMPPP PGPIQPAPIS SAAPAVPLEL PPQPPINLQG LSFSSMSGSE 60 SDDESEDDEM TAETGGSQDR LGKRKRGAGG KRLATFFEGL IKQVVDRQEE MQRRFLETME 120 KREAERTARE EAWRRQEVAR LNREQEQLAQ ERAAAASRDA AIISFLQRIG GQSVQVPPAA 180 TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP PPPQAAPIPA APLQQQPPQP QHKETIHHEA 240 VTPRRAPPTS GSSLELVPAA EQHVESGLGG GEGGSASSSR WPKTEVQALI QLRMELDMRY 300 QETGPKGPLW EEISSGMRRL GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF 360 HQLDVIYRRK HLTGGGGGGA SAANVAATAI EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ 420 VPTSNGDTAP TTATFDVDSG MKKPEDIVRE LSEQPPREFT TDETDSDDMG DDYTDDGEEG 480 EDDGKMQYRI QFQRPNPGGA NTAPPPATTP ASAVPTSTPT STFLAMVQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107139 | 0.0 | AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence. |