PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g42950.1 | ||||||||
Common Name | LOC4336355, Os04g0508500, OSNPB_040508500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 30659.2 Da PI: 7.572 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed llv+ v+q+G g+W+++++ g++R++k+c++rw +yl LOC_Os04g42950.1 25 KGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 72 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 78 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ LOC_Os04g42950.1 78 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 122 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.654 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-29 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-17 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.67E-12 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 78 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 80 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.10E-11 | 82 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAAAEVQSAA GWGRQLQQDG GGWRKGPWTS QEDALLVEHV RQHGEGRWNS VSKLTGLKRS 60 GKSCRLRWVN YLRPDLKRGK ITPQEESIIV QLHALWGNRW STIARSLPGR TDNEIKNYWR 120 THFKKGKPSK NIERARARFL KQRREMQQSQ QLQQPTLMPT PTPQSKDIIV AETGDARTDD 180 DAGGAAAAVA PSSSSSSLSM GGGEAEDLIM HQDAMDDLMM CPAMSYHLIL HGAAVAGHQL 240 SDGGGSCCAS TSEDYGSSED DGATWGSLWN LDGAAGACTL W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 4 | 125 | 9 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994829 | 0.0 | ||||
Expression Atlas | A0A0P0WCH5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g42950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g42950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 0.0 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634463.1 | 0.0 | transcription factor WER | ||||
TrEMBL | A0A0P0WCH5 | 0.0 | A0A0P0WCH5_ORYSJ; Os04g0508500 protein | ||||
STRING | OS04T0508500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-66 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g42950.1 |
Entrez Gene | 4336355 |