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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os04g41229.1 |
Common Name | LOC4336235, Os04g0489600, OSNPB_040489600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 370aa MW: 39194.1 Da PI: 8.9299 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os04g41229.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.2 | 1.1e-11 | 297 | 342 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+++Er RR ri +++ +L+ l+P+ +k s +++L +Av++Ik Lq
LOC_Os04g41229.1 297 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 342
689*********************7....688*****************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP 60 ERAMRQQHYG GGGSGAAEIS LGHGHGHGGK HHFHQFGVEA KDGGGGGDQS GFLTRHNSSP 120 PGFFSSPVMD NGFSSSARPA GSSLGEVRHG AMSSSSNNNK KMKAPLSFAS SRQGSGGLSQ 180 ISEDGIPDLT DSIHGAAHHH GRSEENVSTH DHVVRSFSSG GFSIGSWEDS NSIVFSTSTG 240 KSGAHGNDDI IATLSNYESQ LVAPREMAGV EKYLQMQHDQ VPFRVRAKRG CATHPRSIAE 300 RERRTRISEK LRKLQALVPN MDKQTSTSDM LDLAVDHIKG LQSQLQTLKE DKEKCTCSCK 360 QASRNRPAD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK068039 | 0.0 | AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence. |