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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os04g36790.1 |
Common Name | LOC4335961, Os04g0445600, OSJNBa0027P08.13, OSNPB_040445600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 418aa MW: 43926.2 Da PI: 7.0386 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os04g36790.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 41.6 | 3.3e-13 | 68 | 149 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ +++g+ + s +qCk++++ l+k+yk +++ + ++++f +l+
LOC_Os04g36790.1 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 149
*************************************87888866222667**************99988876.......488888876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG 60 GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC 120 KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP GGNGGGGVGA SVNGRNPVPA 180 ALRVGFPQRS RTPLMPAPVS AVKRRAPSPE PSASSESSDG FPPERQPAFP PLPLPPPPNG 240 KRSRADEGRG GGAGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS 300 ELESQRVQFF LNTQMELSQV KDHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH 360 RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSSDEED DEEEESQ*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL731593 | 0.0 | AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 1e-32 | sequence-specific DNA binding transcription factors |